| Protein ZmIAA20 | |
|---|---|
|
ZmIAA20 is a protein in the Aux/IAA family.
|
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| Information | |
| Coreg Name: | ZmIAA20 |
| Species: | Maize |
| Coreg Family: | Aux/IAA |
| Gene Name(Synonym): | BIF4 |
| Uniprot ID: | K7UR19 |
Protein ZmIAA20
ZmIAA20 is a protein in the Aux/IAA family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF02309 | |
| Zm00001eb283560_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d037691 | DAPseq |  |
sequence | fimo | position |
| Zm00001d037691 | DAPseq |  |
sequence | fimo | position |
| Zm00001d037691 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d037691 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmIAA20 is the regulator
Interactions where ZmIAA20 is the target
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Zm00001eb283560_T001 from maize genome v5
Amino Acid Sequence
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MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSLRAATRKRAAA
MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSLRAATRKRAAA
MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSLRAATRKRAAA
MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSLRAATRKRAAA
MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSLRAATRKRAAA
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF02309 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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ACAAGCAAATGCTGCGCCCGCGAAT...
ACAAGCAAATGCTGCGCCCGCGAATCTCTCGCCTTTTTATCGCTGTCGCTCCTCTCTCTCTCTCCAAACCTTGTCCCATCCCATCTCGCGCGAGATCGGCGCAGCCGCGCAGCTTTCCCCTCCCTTGACCTTTCCACCGGTCTCTGCGCTCCTGCCCCGCCTGCTCCTCGGGCGTAGCGACCGCCGACCGGCTGCGGCTGCTGCAGGTGCTCGAGTGGAGCTCTGCTGCGTGCTCTGTGCTCTCTCTCCGCTTTCTCGTTGCAGTTGCAGCAGCCGCTTCATGTCACCCGTCCGGCCAACTAGCGCATCCCACCGGCCGCCGGCCAGCCTGTGTCTCTCTGAGTGGCTCACCGCACTGCGCCCCGTTTCAGAGTGGTAGCAGTGCTGCGACTGCGTGCACAGGGTATATAGATAGATAGGAGTACACTGCGTAGGAGACAGCAAGAGGGCGAGGCTGTGTGTGAGAGAGGGGGAGGCAGAGAACATTCGGCAGTGTGAGAATCGGAATCGGAGATGGCTTGGAATGGCCGCTTCGGCGACGACGAGGAGGGGAGCGGCCTTGAGCTCAGCCTTAGCCTCCCGGGCTACTTCTCCGGATCGCCAACCCAAGCTGCAGCAGGTTTCGAGGACAAAGCAGACGGCGGCTCTGCTGCTGCTGCTGCTGCTGGGCGAGCAAAGGGAAGCAATGGCTTCAAGGCCAGGCCGGCGGCAGCTGCTCCGGTCGTGGGATGGCCGCCAGTGCGCGCGTTCCGGCGGAACCTCGCCTCGGCGTCCTCCAAGCCGTCCCGCGATCCGCCACCAAGCCACAGAGGAAACGAGTCCGCGAGCGTCGGCGCCGGCGGCAAGGCCGTCGAGGGCGGCAACAAGGGCCTGTTCGTCAAGGTCAACATGGACGGCGTGCCCATCGGCCGGAAGCTCGACCTGGGCGGCCACGCCGGCTACGACACGCTAACCGCCGCCGTCGACCACCTCTTCCGCGGCCTCCTCTCCGCTCAAACGTCGGGACCAGGCGGCGAGCGGCAGGCGGTCGCGGGGATCCTGAACGGTGGCGGCGAGTACACGCTGGTGTACGAGGACGACGAGGGAGACCAGATGCTGGTCGGGGACGTGCCGTGGCAGATGTTCGCCGCCACCGCCAGGCGTCTGCGCGTGCTGCGGAGCTCCGATCTCAACCCCTCGTCGCTAAGGGCAGCGACCAGGAAGAGAGCTGCAGCTTAGTGCTGCGCTGGCGTACCCTGGAGTCTCAACTCTGAACATTTTGCGGCCTTTTCGGAGGGCCACCAATGTAAAATTGAAGCGGTTTTTCGTGGATTTTTGTTACCATTACCATCATGTATGTGATCAAGTAGGGAAGCAGGAATCTAGAGGAGATGAGTGGTGTTGTTAGAATCACGTGTCTCAACTTATCTGAAAGTCTAACAAGGTGCCTGTTTGTT
GRMZM5G864847_T01 from maize genome v3
Amino Acid Sequence
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MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSLRAATRKRAAA
Nucleotide Sequence
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ATGGCTTGGAATGGCCGCTTCGGCG...
ATGGCTTGGAATGGCCGCTTCGGCGACGACGAGGAGGGGAGCGGCCTTGAGCTCAGCCTTAGCCTCCCGGGCTACTTCTCCGGATCGCCAACCCAAGCTGCAGCAGGTTTCGAGGACAAAGCAGACGGCGGCTCTGCTGCTGCTGCTGCTGCTGGGCGAGCAAAGGGAAGCAATGGCTTCAAGGCCAGGCCGGCGGCAGCTGCTCCGGTCGTGGGATGGCCGCCAGTGCGCGCGTTCCGGCGGAACCTCGCCTCGGCGTCCTCCAAGCCGTCCCGCGATCCGCCACCAAGCCACAGAGGAAACGAGTCCGCGAGCGTCGGCGCCGGCGGCAAGGCCGTCGAGGGCGGCAACAAGGGCCTGTTCGTCAAGGTCAACATGGACGGCGTGCCCATCGGCCGGAAGCTCGACCTGGGCGGCCACGCCGGCTACGACACGCTAACCGCCGCCGTCGACCACCTCTTCCGCGGCCTCCTCTCCGCTCAAACGTCGGGACCAGGCGGCGAGCGGCAGGCGGTCGCGGGGATCCTGAACGGTGGCGGCGAGTACACGCTGGTGTACGAGGACGACGAGGGAGACCAGATGCTGGTCGGGGACGTGCCGTGGCAGATGTTCGCCGCCACCGCCAGGCGTCTGCGCGTGCTGCGGAGCTCCGATCTCAACCCCTCGTCGCTAAGGGCAGCGACCAGGAAGAGAGCTGCAGCTTAGTGCTGCGCTGGCGTACCCTGGAGTCTCAACTCTGAACATTTTGCGGCCTTTTCGGAGGGCCACCAATGTAAAATTGAAGCGGTTTTTCGTGGATTTTTGTTACCATTACCATCATGTATGTGATCAAGTAGGGAAGCAGGAATCTAGAGGAGATGAGTGGTG
Zm00001d037691_T001 from maize genome v4
Amino Acid Sequence
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MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSVTKGSDQEESCSLVLRW
RTLESQL
Nucleotide Sequence
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AAGCAAATGCTGCGCCCGCGAATCT...
AAGCAAATGCTGCGCCCGCGAATCTCTCGCCTTTTTATCGCTGTCGCTCCTCTCTCTCTCTCCAAACCTTGTCCCATCCCATCTCGCGCGAGATCGGCGCAGCCGCGCAGCTTTCCCCTCCCTTGACCTTTCCACCGGTCTCTGCGCTCCTGCCCCGCCTGCTCCTCGGGCGTAGCGACCGCCGACCGGCTGCGGCTGCTGCAGGTGCTCGAGTGGAGCTCTGCTGCGTGCTCTGTGCTCTCTCTCCGCTTTCTCGTTGCAGTTGCAGCAGCCGCTTCATGTCACCCGTCCGGCCAACTAGCGCATCCCACCGGCCGCCGGCCAGCCTGTGTCTCTCTGAGTGGCTCACCGCACTGCGCCCCGTTTCAGAGTGGTAGCAGTGCTGCGACTGCGTGCACAGGGTATATAGATAGATAGGAGTACACTGCGTAGGAGACAGCAAGAGGGCGAGGCTGTGTGTGAGAGAGGGGGAGGCAGAGAACATTCGGCAGTGTGAGAATCGGAATCGGAGATGGCTTGGAATGGCCGCTTCGGCGACGACGAGGAGGGGAGCGGCCTTGAGCTCAGCCTTAGCCTCCCGGGCTACTTCTCCGGATCGCCAACCCAAGCTGCAGCAGGTTTCGAGGACAAAGCAGACGGCGGCTCTGCTGCTGCTGCTGCTGCTGGGCGAGCAAAGGGAAGCAATGGCTTCAAGGCCAGGCCGGCGGCAGCTGCTCCGGTCGTGGGATGGCCGCCAGTGCGCGCGTTCCGGCGGAACCTCGCCTCGGCGTCCTCCAAGCCGTCCCGCGATCCGCCACCAAGCCACAGAGGAAACGAGTCCGCGAGCGTCGGCGCCGGCGGCAAGGCCGTCGAGGGCGGCAACAAGGGCCTGTTCGTCAAGGTCAACATGGACGGCGTGCCCATCGGCCGGAAGCTCGACCTGGGCGGCCACGCCGGCTACGACACGCTAACCGCCGCCGTCGACCACCTCTTCCGCGGCCTCCTCTCCGCTCAAACGTCGGGACCAGGCGGCGAGCGGCAGGCGGTCGCGGGGATCCTGAACGGTGGCGGCGAGTACACGCTGGTGTACGAGGACGACGAGGGAGACCAGATGCTGGTCGGGGACGTGCCGTGGCAGATGTTCGCCGCCACCGCCAGGCGTCTGCGCGTGCTGCGGAGCTCCGATCTCAACCCCTCGTCGGTCACTAAGGGCAGCGACCAGGAAGAGAGCTGCAGCTTAGTGCTGCGCTGGCGTACCCTGGAGTCTCAACTCTGAACATTTTGCGGCCTTTTCGGAGGGCCACCAATGTAAAATTGAAGCGGTTTTTCGTGGATTTTTGTTACCATTACCATCATGTATGTGATCAAGTAGGGAAGCAGGAATCTAGAGGAGATGAGTGGTGTTGTTAGAATCACCTAGATTTTCAGAAAAGCTGGTCAGAAAAAAGCTGAACCAAACAGCCCCAAGGTGTCTTGGCGCTGGAGTGTATAGT
Zm00001d037691_T002 from maize genome v4
Amino Acid Sequence
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MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSLRAATRKRAAA
Nucleotide Sequence
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AGCAAGAGGGCGAGGCTGTGTGTGA...
AGCAAGAGGGCGAGGCTGTGTGTGAGAGAGGGGGAGGCAGAGAACATTCGGCAGTGTGAGAATCGGAATCGGAGATGGCTTGGAATGGCCGCTTCGGCGACGACGAGGAGGGGAGCGGCCTTGAGCTCAGCCTTAGCCTCCCGGGCTACTTCTCCGGATCGCCAACCCAAGCTGCAGCAGGTTTCGAGGACAAAGCAGACGGCGGCTCTGCTGCTGCTGCTGCTGCTGGGCGAGCAAAGGGAAGCAATGGCTTCAAGGCCAGGCCGGCGGCAGCTGCTCCGGTCGTGGGATGGCCGCCAGTGCGCGCGTTCCGGCGGAACCTCGCCTCGGCGTCCTCCAAGCCGTCCCGCGATCCGCCACCAAGCCACAGAGGAAACGAGTCCGCGAGCGTCGGCGCCGGCGGCAAGGCCGTCGAGGGCGGCAACAAGGGCCTGTTCGTCAAGGTCAACATGGACGGCGTGCCCATCGGCCGGAAGCTCGACCTGGGCGGCCACGCCGGCTACGACACGCTAACCGCCGCCGTCGACCACCTCTTCCGCGGCCTCCTCTCCGCTCAAACGTCGGGACCAGGCGGCGAGCGGCAGGCGGTCGCGGGGATCCTGAACGGTGGCGGCGAGTACACGCTGGTGTACGAGGACGACGAGGGAGACCAGATGCTGGTCGGGGACGTGCCGTGGCAGATGTTCGCCGCCACCGCCAGGCGTCTGCGCGTGCTGCGGAGCTCCGATCTCAACCCCTCGTCGCTAAGGGCAGCGACCAGGAAGAGAGCTGCAGCTTAGTGCTGCGCTGGCGTACCCTGGAGTCTCAACTCTGAACATTTTGCGGCCTTTTCGGAGGGCCACCAATGTAAAATTGAAGCGGTTTTTCGTGGATTTTTGTTACCATTACCATCATGTATGTGATCAAGTAGGGAAGCAGGAATCTAGAGGAGATGAGTGGTGTTGTTAGAATCACGTGTCTCAACTTATCTGAAAGTCTAACAAGGTGCCTGTTTGTTTCGGCTTTTGCCAGCTTCTGGCCACCAAAAGCTGCTGCGGACTGCCAAACGCTCAGCTTTTCAGCCAACTTCTATAAAATTCGTTAGGGCAAAAACCATTTAAAATCAACATAAACACATAATCGGTTGAGTCGTTGTAATAGTAGGAATCCGTCACTTTCTAGATCCTGAGCCCTATG
Zm00001d037691_T003 from maize genome v4
Amino Acid Sequence
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MAWNGRFGDDEEGSGLELSLSLPGYFSGSPTQAAAGFEDKADGGSAAAAAAGRAKGSNGFKARPAAAAPVVGWPPVRAFR
RNLASASSKPSRDPPPSHRGNESASVGAGGKAVEGGNKGLFVKVNMDGVPIGRKLDLGGHAGYDTLTAAVDHLFRGLLSA
QTSGPGGERQAVAGILNGGGEYTLVYEDDEGDQMLVGDVPWQMFAATARRLRVLRSSDLNPSSVTKGSDQEESCSLVLRW
RTLESQL
Nucleotide Sequence
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AAGCAAATGCTGCGCCCGCGAATCT...
AAGCAAATGCTGCGCCCGCGAATCTCTCGCCTTTTTATCGCTGTCGCTCCTCTCTCTCTCTCCAAACCTTGTCCCATCCCATCTCGCGCGAGATCGGCGCAGCCGCGCAGCTTTCCCCTCCCTTGACCTTTCCACCGGTCTCTGCGCTCCTGCCCCGCCTGCTCCTCGGGCGTAGCGACCGCCGACCGGCTGCGGCTGCTGCAGGTGCTCGAGTGGAGCTCTGCTGCGTGCTCTGTGCTCTCTCTCCGCTTTCTCGTTGCAGTTGCAGCAGCCGCTTCATGTCACCCGTCCGGCCAACTAGCGCATCCCACCGGCCGCCGGCCAGCCTGTGTCTCTCTGAGTGGCTCACCGCACTGCGCCCCGTTTCAGAGTGGTAGCAGTGCTGCGACTGCGTGCACAGGGTATATAGATAGATAGGAGTACACTGCGTAGGAGACAGCAAGAGGGCGAGGCTGTGTGTGAGAGAGGGGGAGGCAGAGAACATTCGGCAGTGTGAGAATCGGAATCGGAGATGGCTTGGAATGGCCGCTTCGGCGACGACGAGGAGGGGAGCGGCCTTGAGCTCAGCCTTAGCCTCCCGGGCTACTTCTCCGGATCGCCAACCCAAGCTGCAGCAGGTTTCGAGGACAAAGCAGACGGCGGCTCTGCTGCTGCTGCTGCTGCTGGGCGAGCAAAGGGAAGCAATGGCTTCAAGGCCAGGCCGGCGGCAGCTGCTCCGGTCGTGGGATGGCCGCCAGTGCGCGCGTTCCGGCGGAACCTCGCCTCGGCGTCCTCCAAGCCGTCCCGCGATCCGCCACCAAGCCACAGAGGAAACGAGTCCGCGAGCGTCGGCGCCGGCGGCAAGGCCGTCGAGGGCGGCAACAAGGGCCTGTTCGTCAAGGTCAACATGGACGGCGTGCCCATCGGCCGGAAGCTCGACCTGGGCGGCCACGCCGGCTACGACACGCTAACCGCCGCCGTCGACCACCTCTTCCGCGGCCTCCTCTCCGCTCAAACGTCGGGACCAGGCGGCGAGCGGCAGGCGGTCGCGGGGATCCTGAACGGTGGCGGCGAGTACACGCTGGTGTACGAGGACGACGAGGGAGACCAGATGCTGGTCGGGGACGTGCCGTGGCAGATGTTCGCCGCCACCGCCAGGCGTCTGCGCGTGCTGCGGAGCTCCGATCTCAACCCCTCGTCGGTCACTAAGGGCAGCGACCAGGAAGAGAGCTGCAGCTTAGTGCTGCGCTGGCGTACCCTGGAGTCTCAACTCTGAACATTTTGCGGCCTTTTCGGAGGGCCACCAATGTAAAATTGAAGCGGTTTTTCGTGGATTTTTGTTACCATTACCATCATGTATGTGATCAAGTAGGGAAGCAGGAATCTAGAGGAGATGAGTGGTGTTGTTAGAATCACGTGTCTCAACTTATCTGAAAGTCTAACAAGGTGCCTGTTTGTTTCGGCTTTTGCCAGCTTCTGGCCACCAAAAGCTGCTGCGGACTGCCAAACGCTCAGCTTTTCAGCCAACTTCTATAAAATTCGTTAGGGCAAAAACCATTTAAAATCAACATAAACACATAATCGGTTGAGTCGTTGTAATAGTAGGAATCCGTCACTTTCTAGATCCTGAGCCCTATG
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